Protein-coding gene in humans
CST11 |
---|
|
Identifiers |
---|
Aliases | CST11, CST8L, CTES2, SC13, dJ322G13.6, cystatin 11 |
---|
External IDs | OMIM: 609731; MGI: 1925490; HomoloGene: 15634; GeneCards: CST11; OMA:CST11 - orthologs |
---|
Gene location (Human) |
---|
![Chromosome 20 (human)](//upload.wikimedia.org/wikipedia/commons/thumb/f/ff/Ideogram_human_chromosome_20.svg/300px-Ideogram_human_chromosome_20.svg.png) | Chr. | Chromosome 20 (human)[1] |
---|
| Band | 20p11.21 | Start | 23,450,403 bp[1] |
---|
End | 23,452,876 bp[1] |
---|
|
Gene location (Mouse) |
---|
![Chromosome 2 (mouse)](//upload.wikimedia.org/wikipedia/commons/thumb/b/bb/Ideogram_house_mouse_chromosome_2.svg/260px-Ideogram_house_mouse_chromosome_2.svg.png) | Chr. | Chromosome 2 (mouse)[2] |
---|
| Band | 2|2 G3 | Start | 148,610,529 bp[2] |
---|
End | 148,613,417 bp[2] |
---|
|
RNA expression pattern |
---|
Bgee | Human | Mouse (ortholog) |
---|
Top expressed in | - corpus epididymis
- gonad
- buccal mucosa cell
- caput epididymis
- tail of epididymis
- decidua
- stromal cell of endometrium
- granulocyte
- mucosa of nose
- fundus
|
| Top expressed in | - embryo
- morula
- dorsal striatum
- white adipose tissue
- foregut
- gonad
- stomach
- testicle
- gastrula
|
| More reference expression data |
|
---|
BioGPS | |
---|
|
Gene ontology |
---|
Molecular function | - peptidase inhibitor activity
- protease binding
- cysteine-type endopeptidase inhibitor activity
| Cellular component | - sperm flagellum
- sperm head
- extracellular space
- extracellular region
- nucleus
- cytoplasm
| Biological process | - negative regulation of peptidase activity
- defense response to bacterium
- androgen receptor signaling pathway
- defense response to Gram-negative bacterium
- negative regulation of cysteine-type endopeptidase activity
- negative regulation of endopeptidase activity
| Sources:Amigo / QuickGO |
|
Orthologs |
---|
Species | Human | Mouse |
---|
Entrez | | |
---|
Ensembl | | |
---|
UniProt | | |
---|
RefSeq (mRNA) | | |
---|
RefSeq (protein) | | |
---|
Location (UCSC) | Chr 20: 23.45 – 23.45 Mb | Chr 2: 148.61 – 148.61 Mb |
---|
PubMed search | [3] | [4] |
---|
|
Wikidata |
View/Edit Human | View/Edit Mouse |
|
Cystatin-11 is a protein that in humans is encoded by the CST11 gene.[5]
The cystatin superfamily encompasses proteins that contain multiple cystatin-like sequences. Some of the members are active cysteine protease inhibitors, while others have lost or perhaps never acquired this inhibitory activity.
There are three inhibitory families in the superfamily, including the type 1 cystatins (stefins), type 2 cystatins and the kininogens. The type 2 cystatin proteins are a class of cysteine proteinase inhibitors found in a variety of human fluids and secretions.
The cystatin locus on chromosome 20 contains the majority of the type 2 cystatin genes and pseudogenes. This gene is located in the cystatin locus and encodes an epididymal-specific protein whose specific function has not been determined. Alternative splicing yields two variants encoding distinct isoforms.[5]
References
- ^ a b c GRCh38: Ensembl release 89: ENSG00000125831 – Ensembl, May 2017
- ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000036958 – Ensembl, May 2017
- ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
- ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
- ^ a b "Entrez Gene: CST11 cystatin 11".
External links
Further reading
- Brown WM, Dziegielewska KM (1997). "Friends and relations of the cystatin superfamily--new members and their evolution". Protein Sci. 6 (1): 5–12. doi:10.1002/pro.5560060102. PMC 2143511. PMID 9007972.
- Saitoh E, Isemura S, Sanada K, et al. (1989). "Cystatin superfamily. Evidence that family II cystatin genes are evolutionarily related to family III cystatin genes". Biol. Chem. Hoppe-Seyler. 369 Suppl: 191–7. PMID 3202964.
- Dickinson DP, Thiesse M, Dempsey LD, Millar SJ (1993). "Genomic cloning, physical mapping, and expression of human type 2 cystatin genes". Crit. Rev. Oral Biol. Med. 4 (3–4): 573–80. doi:10.1177/10454411930040034401. PMID 7690606.
- Dickinson DP, Zhao Y, Thiesse M, Siciliano MJ (1995). "Direct mapping of seven genes encoding human type 2 cystatins to a single site located at 20p11.2". Genomics. 24 (1): 172–5. doi:10.1006/geno.1994.1595. PMID 7896273.
- Thiesse M, Millar SJ, Dickinson DP (1994). "The human type 2 cystatin gene family consists of eight to nine members, with at least seven genes clustered at a single locus on human chromosome 20". DNA Cell Biol. 13 (2): 97–116. doi:10.1089/dna.1994.13.97. PMID 8179826.
- Deloukas P, Matthews LH, Ashurst J, et al. (2002). "The DNA sequence and comparative analysis of human chromosome 20". Nature. 414 (6866): 865–71. Bibcode:2001Natur.414..865D. doi:10.1038/414865a. PMID 11780052.
- Hamil KG, Liu Q, Sivashanmugam P, et al. (2002). "Cystatin 11: a new member of the cystatin type 2 family". Endocrinology. 143 (7): 2787–96. doi:10.1210/endo.143.7.8925. PMID 12072414.
- Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
- Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.