KiSAO

PMID 22027554AccessStandardsMIRIAMData formatOWLWebsiteKiSAO home page, KiSAO at BioPortalDownload URLKiSAO home pageToolsStandalonelibKiSAO, a java library to query KiSAOMiscellaneousLicenseArtistic LicenceVersion2.3.5 (April 2014)Curation policyyes (manual)Bookmarkable
entitiesyes

The Kinetic Simulation Algorithm Ontology (KiSAO) supplies information about existing algorithms available for the simulation of systems biology models, their characterization and interrelationships. KiSAO is part of the BioModels.net project and of the COMBINE initiative.[1]

Structure

KiSAO consists of three main branches:

  • simulation algorithm
  • simulation algorithm characteristic
  • simulation algorithm parameter

The elements of each algorithm branch are linked to characteristic and parameter branches using has characteristic and has parameter relationships accordingly. The algorithm branch itself is hierarchically structured using relationships which denote that the descendant algorithms were derived from, or specify, more general ancestors.

See also

  • COMBINE
  • SED-ML
  • MIRIAM
  • SBO
  • TEDDY

References

  1. ^ Courtot, M.; Juty, N.; Knupfer, C.; Waltemath, D.; Zhukova, A.; Drager, A.; Dumontier, M.; Finney, A.; Golebiewski, M.; Hastings, J.; Hoops, S.; Keating, S.; Kell, D. B.; Kerrien, S.; Lawson, J.; Lister, A.; Lu, J.; Machne, R.; Mendes, P.; Pocock, M.; Rodriguez, N.; Villeger, A.; Wilkinson, D. J.; Wimalaratne, S.; Laibe, C.; Hucka, M.; Le Novere, N. (2014). "Controlled vocabularies and semantics in systems biology". Molecular Systems Biology. 7: 543. doi:10.1038/msb.2011.77. PMC 3261705. PMID 22027554.