KiSAO
PMID 22027554Access Standards MIRIAM Data format OWL Website KiSAO home page, KiSAO at BioPortal Download URL KiSAO home page Tools Standalone libKiSAO, a java library to query KiSAO Miscellaneous License Artistic Licence Version 2.3.5 (April 2014) Curation policy yes (manual) Bookmarkable
entities yes
entities
The Kinetic Simulation Algorithm Ontology (KiSAO) supplies information about existing algorithms available for the simulation of systems biology models, their characterization and interrelationships. KiSAO is part of the BioModels.net project and of the COMBINE initiative.[1]
Structure
KiSAO consists of three main branches:
- simulation algorithm
- simulation algorithm characteristic
- simulation algorithm parameter
The elements of each algorithm branch are linked to characteristic and parameter branches using has characteristic and has parameter relationships accordingly. The algorithm branch itself is hierarchically structured using relationships which denote that the descendant algorithms were derived from, or specify, more general ancestors.
See also
- COMBINE
- SED-ML
- MIRIAM
- SBO
- TEDDY
References
- ^ Courtot, M.; Juty, N.; Knupfer, C.; Waltemath, D.; Zhukova, A.; Drager, A.; Dumontier, M.; Finney, A.; Golebiewski, M.; Hastings, J.; Hoops, S.; Keating, S.; Kell, D. B.; Kerrien, S.; Lawson, J.; Lister, A.; Lu, J.; Machne, R.; Mendes, P.; Pocock, M.; Rodriguez, N.; Villeger, A.; Wilkinson, D. J.; Wimalaratne, S.; Laibe, C.; Hucka, M.; Le Novere, N. (2014). "Controlled vocabularies and semantics in systems biology". Molecular Systems Biology. 7: 543. doi:10.1038/msb.2011.77. PMC 3261705. PMID 22027554.