PDS5B

Protein-coding gene in the species Homo sapiens
PDS5B
Available structures
PDBOrtholog search: PDBe RCSB
List of PDB id codes

5HDT

Identifiers
AliasesPDS5B, APRIN, AS3, CG008, PDS5 cohesin associated factor B
External IDsOMIM: 605333; MGI: 2140945; HomoloGene: 41001; GeneCards: PDS5B; OMA:PDS5B - orthologs
Gene location (Human)
Chromosome 13 (human)
Chr.Chromosome 13 (human)[1]
Chromosome 13 (human)
Genomic location for PDS5B
Genomic location for PDS5B
Band13q13.1Start32,586,452 bp[1]
End32,778,019 bp[1]
Gene location (Mouse)
Chromosome 5 (mouse)
Chr.Chromosome 5 (mouse)[2]
Chromosome 5 (mouse)
Genomic location for PDS5B
Genomic location for PDS5B
Band5|5 G3Start150,597,204 bp[2]
End150,734,155 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • Achilles tendon

  • sural nerve

  • endothelial cell

  • testicle

  • epithelium of colon

  • ventricular zone

  • buccal mucosa cell

  • tibia

  • bone marrow cells

  • oocyte
Top expressed in
  • superior cervical ganglion

  • otolith organ

  • utricle

  • nucleus accumbens

  • anterior amygdaloid area

  • renal corpuscle

  • olfactory tubercle

  • vas deferens

  • ventromedial nucleus

  • paraventricular nucleus of hypothalamus
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
  • protein binding
  • ATP binding
  • DNA binding
Cellular component
  • chromosome
  • cytosol
  • chromatin
  • chromosome, centromeric region
  • nucleoplasm
  • nucleus
Biological process
  • cell division
  • cell cycle
  • cell population proliferation
  • regulation of cell population proliferation
  • mitotic sister chromatid cohesion
  • negative regulation of cell population proliferation
  • DNA repair
  • lens development in camera-type eye
  • enteric nervous system development
  • neuroblast migration
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

23047

100710

Ensembl

ENSG00000083642

ENSMUSG00000034021

UniProt

Q9NTI5

Q4VA53

RefSeq (mRNA)

NM_015032
NM_015928

NM_175310
NM_001346503

RefSeq (protein)

NP_055847

NP_001333432
NP_780519

Location (UCSC)Chr 13: 32.59 – 32.78 MbChr 5: 150.6 – 150.73 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Sister chromatid cohesion protein PDS5 homolog B (PDS5B) is a protein that in humans is encoded by the PDS5B gene.[5][6][7] It is a regulatory subunit of the Cohesin complex which mediates sister chromatid cohesion, homologous recombination and DNA looping. The core cohesin complex is formed of SMC3, SMC1, RAD21 and either SA1 or SA2. PDS5 associates with WAPL to stimulate the release of cohesin from DNA but during DNA replication PDS5 promotes acetylation of SMC3 by ESCO1 and ESCO2.

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000083642 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000034021 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Couch FJ, Rommens JM, Neuhausen SL, Belanger C, Dumont M, Abel K, Bell R, Berry S, Bogden R, Cannon-Albright L, Farid L, Frye C, Hattier T, Janecki T, Jiang P, Kehrer R, Leblanc JF, McArthur-Morrison J, Meney D, Miki Y, Peng Y, Samson C, Schroeder M, Snyder SC, Simard J, et al. (Feb 1997). "Generation of an integrated transcription map of the BRCA2 region on chromosome 13q12-q13". Genomics. 36 (1): 86–99. doi:10.1006/geno.1996.0428. PMID 8812419.
  6. ^ Geck P, Szelei J, Jimenez J, Sonnenschein C, Soto AM (May 1999). "Early gene expression during androgen-induced inhibition of proliferation of prostate cancer cells: a new suppressor candidate on chromosome 13, in the BRCA2-Rb1 locus". J Steroid Biochem Mol Biol. 68 (1–2): 41–50. doi:10.1016/S0960-0760(98)00165-4. PMID 10215036. S2CID 32542980.
  7. ^ "Entrez Gene: APRIN androgen-induced proliferation inhibitor".


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